Jacobo Aguirre's

Publications

If you want to see the same information, but in a nicer environment and where some metrics of the papers are present (such as the number of citations, etc.), please visit my Google Scholar webpage.

From this page you can download my open-access publications. In some non open-access cases, an Arxiv (or similar) version is available. Anyway, if you want any paper, please press here and I will be very happy to send it to you.

2023

A Theoretical approach to the complex chemical evolution of phosphorus in the interstellar medium, M Fernández-Ruz, I Jiménez-Serra and J Aguirre, ASTROPHYSICAL JOURNAL 956, 47 (2023).

Virus-host protein co-expression networks reveal temporal organization and strategies of viral infection, J Aguirre and R Guantes, iScience 26(12), 108475 (2023). DOI: 10.1016/j.isci.2023.108475

Entropic contribution to phenotype fitness, P Catalán, JA García-Martín, J Aguirre, JA Cuesta and Susanna Manrubia, JOURNAL OF PHYSICS A: MATHEMATICAL AND THEORETICAL 56, 345601 (2023).

Life detection and microbial biomarker profiling with Signs of Life Detector-Life Detector Chip during a Mars drilling simulation campaign in the hyperarid core of the Atacama desert, M Moreno-Paz, RS dos Santos Severino, L Sánchez-García, JM Manchado, MA Fernández-Martínez, M García-Villadangos, J Aguirre, D Carrizo, L Kobayashi, A Dave, K Warren-Rhodes, A Dávila, CR Stoker, B Glass and V Parro, . ASTROBIOLOGY 23 (12), 1-25 (2023).

2022

Life finds a way, J Aguirre, NATURE ECOLOGY & EVOLUTION 6, 1599 (2022). Open access to the paper here.

The emergence of interstellar molecular complexity explained by interacting networks, M García-Sánchez, I Jiménez-Serra, F Puente-Sánchez and J Aguirre, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES 119 (30) e2119734119 (2022). The work explained in a few lines here.

Defective subviral particles modify ecological equilibria and enhance viral coexistence, A Lucía-Sanz, J Aguirre, A Fraile, F García-Arenal and S Manrubia, FRONTIERS IN VIROLOGY 2, 929851 (2022).

Mars-like UV flux and ionizing radiation dfferently affect biomarker detectability in the desert Cyanobacterium Chroococcidiopsis as revealed by the Life Detector Chip Antibody Microarray, D Billi, Y Blanco-López, A Ianneo, M Moreno-Paz, J Aguirre, M Baqué, R Moeller, JP Paul de Vera and V Parro, ASTROBIOLOGY 22(10), 1199 (2022).

The long and winding road to understanding organismal construction: Reply to comments on “From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics”, S Manrubia, JA Cuesta, J Aguirre, SE Ahnert, L Altenberg, AV Cano, P Catalán, R Diaz-Uriarte, SF Elena, JA García-Martín, P Hogeweg, BS Khatri, J Krug, AA Louis, NS Martin, JL Payne, MJ Tarnowski and M Weiß, PHYSICS OF LIFE REVIEWS 42, 19 (2022).

2021

From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics, S Manrubia, JA Cuesta, J Aguirre, SE Ahnert, L Altenberg, AV Cano, P Catalán, R Diaz-Uriarte, SF Elena, JA García-Martín, P Hogeweg, BS Khatri, J Krug, AA Louis, NS Martin, JL Payne, MJ Tarnowski and M Weiß, PHYSICS OF LIFE REVIEWS 38, 55 (2021).

2020

Emergence of complex socioeconomic networks driven by individual and collective interests, J Iranzo, F Pablo-Martí and J Aguirre, PHYSICAL REVIEW RESEARCH 2, 043352 (2020).

The resumption of sports competitions after COVID-19 lockdown: The case of the Spanish football league, JM Buldú, DR Antequera and J Aguirre, CHAOS, SOLITONS & FRACTALS 138, 109964 (2020).

Mathematical models can help analyzing the effects of COVID-19 in sports competitions, JM Buldú and J Aguirre, INDIAN ACADEMY OF SCIENCES CONFERENCE SERIES 3, 1(2020).

A multiplex immunosensor for detecting perchlorate-reducing bacteria for environmental monitoring and planetary exploration, I Gallardo-Carreño, M Moreno Paz, J Aguirre, Y Blanco, E Alonso-Pintado, I Raymond-Bouchard, C Maggiori, LA Rivas, AL Engelbrektson, L Whyte, V Parro, FRONTIERS IN MICROBIOLOGY 11, 590736 (2020).

Epistasis between cultural traits causes paradigm shifts in cultural evolution, I Pascual, J Aguirre, S Manrubia and JA Cuesta, ROYAL SOCIETY OPEN SCIENCE 7, 191813 (2020).

Cómo las matemáticas podrían ayudar a La Liga a esquivar al coronavirus, MARCA, 13/04/2020.

2019

Taming out-of-equilibrium dynamics on interconnected networks, JM Buldú, F Pablo-Martí and J Aguirre, NATURE COMMUNICATIONS 10, 5314 (2019).

Experimental complexity in physical, social and biological systems, J Aguirre, JA Almendral, JM Buldú, R Criado, R Gutiérrez, I.Leyva, M.Romance and I. Sendiña-Nadal, CHAOS, SOLITONS & FRACTALS 120, 200-202 (2019). Special Issue on Experimental Complexity in Physical, Social and Biological systems, Edited by I Sendiña-Nadal, R Criado, I Leyva, J Buldú, J Almendral, M Romance and J Aguirre, CHAOS, SOLITONS & FRACTALS 120 (2019).,

2018

On the networked architecture of genotype spaces and its critical effects on molecular evolution, J Aguirre, P Catalán, JA Cuesta and S Manrubia, OPEN BIOLOGY 8 (7), 180069 (2018).

Differences in adaptive dynamics determine the success of virus variants that propagate together, M Arribas, J Aguirre, S Manrubia and E Lázaro, VIRUS EVOLUTION 4 (1), vex043 (2018).

Theoretical approaches to disclosing the emergence and adaptive advantages of multipartite viruses, A Lucía-Sanz, J Aguirre and S Manrubia, CURRENT OPINION IN VIROLOGY 33, 89-95 (2018).

2017

The space of genotypes is a network of networks: implications for evolutionary and extinction dynamics, P Yubero, S Manrubia and J Aguirre, SCIENTIFIC REPORTS 7 (1), 13813 (2017).

La cooperación, el poder de los débiles, J Aguirre, EL PAÍS, 06/07/2017.

2016

Competition among networks highlights the power of the weak, J Iranzo, JM Buldú and J Aguirre, NATURE COMMUNICATIONS 7, 13273 (2016).
A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies, F Puente-Sánchez, J Aguirre and V Parro, NUCLEIC ACIDS RESEARCH 44, e40 (2016).
Interconnecting networks: the role of connector links, JM Buldú, R Sevilla-Escoboza, J Aguirre, D Papo and R Gutiérrez, INTERCONNECTED NETWORKS, Ed. A. Garas, Springer, ISBN 978-3-319-23945-3 (2016). Book chapter.
Modelization of evolving RNA replicators. J Aguirre and M Stich, NON-LINEAR DYNAMICS IN BIOLOGICAL SYSTEMS. Eds. J. Carballido-Landeira and B. Escribano, SEMA SIMAI Springer Series. ISBN 978-3-319-33054-9 (2016). Book chapter.
Multiplex fluorescent antibody microarrays and antibody graphs for microbial and biomarker detection in the environment, Y Blanco, M Moreno-Paz, J Aguirre and V Parro, HYDROCARBON AND LIPID MICROBIOLOGY PROTOCOLS, Springer Protocols Handbooks, Eds. T.J. McGenity et al., ISBN 978-3-662-45179-3 (2016). Book chapter.
2015
Tipping points and early warning signals in the genomic composition of populations induced by environmental changes, J Aguirre and S Manrubia, SCIENTIFIC REPORTS 5 (2015).
Dynamical community structure of populations evolving on genotype networks, JA Capitán, J Aguirre and S Manrubia, CHAOS, SOLITONS & FRACTALS 72, 99-106 (2015).
CYANOCHIP: An Antibody Microarray for High-Taxonomical-Resolution Cyanobacterial Monitoring, Y Blanco, A Quesada, I Gallardo-Carreño, J Aguirre and V Parro, ENVIRONMENTAL SCIENCE & TECHNOLOGY 49 (3), 1611-1620 (2015).

2014

Synchronization of interconnected networks: the role of connector nodes, J Aguirre, R Sevilla-Escoboza, R Gutiérrez, D Papo and JM Buldú, PHYSICAL REVIEW LETTERS 112 (24), 248701 (2014).
Deciphering the Prokaryotic Community and Metabolisms in South African Deep-Mine Biofilms through Antibody Microarrays and Graph Theory, Y Blanco, LA Rivas, A García-Moyano, J Aguirre, P Cruz-Gil, A Palacín, E van Heerden and V Parro, PLOS ONE 9 (12), e114180 (2014).
Biología de Sistemas, R Guantes, J Aguirre and D Bajic, BIOINFORMÁTICA CON Ñ, Eds. A. Sebastián and A. Pascual-García, Arquitectura Viva, ISBN 978-84-617-1976-1 (2014). Book chapter.
Estructura, Plegamiento y Evolución de RNA, M Stich, J. Aguirre and I Dotú, BIOINFORMÁTICA CON Ñ, Eds. A. Sebastián and A. Pascual-García, Arquitectura Viva, ISBN 978-84-617-1976-1 (2014). Book chapter.

2013

Successful strategies for competing networks, J Aguirre, D Papo and JM Buldú, NATURE PHYSICS 9 (4), 230-234 (2013). Link, Arxiv, Supp. Info.

2012

Graph based study of allergen cross-reactivity of plant lipid transfer proteins (LTPs) using microarray in a multicenter study, A Palacín, C Gómez-Casado, L Rivas, J Aguirre et al., PLOS ONE 7(12): e50799 (2012).
The involvement of thaumatin-like proteins in plant food cross-reactivity: a multicenter study using a specific protein microarray, A Palacín, LA Rivas, C Gómez-Casado, J Aguirre et al., PLOS ONE 7(9): e44088 (2012).
Analysis of plant food cross-reactivity using a new allergen microarray: geographical recognition of lipid transfer proteins and thaumatins in fruit allergic patients, A Palacín, C Gómez-Casado, L Rivas, J Aguirre et al., ALLERGY 67, 86-87 (2012). Conference proceeding.
2011
Struggle for space: viral extinction through competition for cells, JA Cuesta, J Aguirre, JA Capitán and SC Manrubia, PHYSICAL REVIEW LETTERS 106 (2), 028104 (2011).
Graph‐based deconvolution analysis of multiplex sandwich microarray immunoassays: applications for environmental monitoring, LA Rivas, J Aguirre, Y Blanco, E González‐Toril and V Parro, ENVIRONMENTAL MICROBIOLOGY 13 (6), 1421-1432 (2011).
Topological structure of the space of phenotypes: the case of RNA neutral networks, J Aguirre, JM Buldú, M Stich and SC Manrubia, PLOS ONE 6 (10) 27 (2011).
Severe hindrance of viral infection propagation in spatially extended hosts, JA Capitán, JA Cuesta, SC Manrubia and J Aguirre, PLOS ONE 6 (8), 358 (2011).
Campos magnéticos caóticos creados por cables de corriente continua, J Aguirre, D Peralta-Salas, REVISTA IBEROAMERICANA DE FÍSICA 7 (1), 20-25 (2011).

2010

Motion of charged particles in magnetic fields created by symmetric configurations of wires, J Aguirre, A Luque and D Peralta-Salas, PHYSICA D: NONLINEAR PHENOMENA 239 (10), 654-674 (2010).
Teaching and Communicating Astronomy at Rey Juan Carlos University, M Hernán–Obispo, A Serrano, J Aguirre, and P San Martın, HIGHLIGHTS OF SPANISH ASTROPHYSICS V 1, 553 (2010).

2009

Fractal structures in nonlinear dynamics, J Aguirre, RL Viana, MAF Sanjuán, REVIEWS OF MODERN PHYSICS 81 (1), 333 (2009).
Evolutionary dynamics on networks of selectively neutral genotypes: Effects of topology and sequence stability, J Aguirre, JM Buldú, and SC Manrubia, PHYSICAL REVIEW E 80 (6), 066112 (2009)
A trade-off between neutrality and adaptability limits the optimization of viral quasispecies, J Aguirre, E Lázaro and SC Manrubia, JOURNAL OF THEORETICAL BIOLOGY 261 (1), 148-155 (2009).
Seeking Robustness: High neutrality and stable structures in populations of RNA sequences, JM Buldu, J Aguirre and SC Manrubia, ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES 39 (3-4), 199 (2009). Conference proceeding.
A Trade-off between neutrality and adaptability limits the optimization of viral quasispecies, J Aguirre, E Lázaro and SC Manrubia, ORIGINS OF LIFE AND EVOLUTION OF BIOSPHERES 39, 333 (2009). Conference proceeding.

2008

Effects of spatial competition on the diversity of a quasispecies, J Aguirre and SC Manrubia, PHYSICAL REVIEW LETTERS 100 (3), 038106 (2008).
Integrability of magnetic fields created by current distributions, J Aguirre, J Giné and D Peralta-Salas, NONLINEARITY 21 (1), 51 (2008).

2007

Realistic examples of chaotic magnetic fields created by wires, J Aguirre and D Peralta-Salas, EPL (EUROPHYSICS LETTERS) 80 (6), 60007 (2007)
Out-of-equilibrium competitive dynamics of quasispecies, J Aguirre and SC Manrubia, EPL (EUROPHYSICS LETTERS) 77 (3), 38001 (2007).
Mathematical modelling of the pancreatic beta cell, J Aguirre and MAF Sanjuán, PHYSICS OF COMPLEX SYSTEMS AND LIFE SCIENCES, 1 -20, Eds. MAF Sanjuán and A Wagemakers, IndiaResearch Signpost (2007). Book chapter.

2006

Basin topology in dissipative chaotic scattering, JM Seoane, J Aguirre, MAF Sanjuán and YC Lai, CHAOS: AN INTERDISCIPLINARY JOURNAL OF NONLINEAR SCIENCE 16 (2), 023101 (2006).
Fractalidad extrema e indeterminación clásica en sistemas dinámicos, J Aguirre and MAF Sanjuán, GACETA DE LA REAL SOCIEDAD MATEMÁTICA ESPAÑOLA 9 (1), 43-57 (2006).

2004

Analysis of the noise-induced bursting-spiking transition in a pancreatic β-cell model, J Aguirre, E Mosekilde and MAF Sanjuán, PHYSICAL REVIEW E 69 (4), 041910 (2004).
Controlling chaotic transients: Yorke’s game of survival, J Aguirre, F d’Ovidio and MAF Sanjuán, PHYSICAL REVIEW E 69 (1), 016203 (2004).
Le jeu de la survie en dynamique non linéaire, MAF Sanjuán, J Aguirre and F d’Ovidio, COMPTE-RENDUS DE LA 7 EME RENCONTRE DU NON-LINEAIRE 2004, Eds. Y. Pomeau and R. Ribotta (Non-Linéaire Publications, Orsay 2004), 263 - 268, France.
Incertidumbre Clásica, Dispersión Caótica y Estructuras Fractales en Física, J Aguirre and MAF Sanjuán, REVISTA ESPAÑOLA DE FÍSICA 18 (3), 23-27 (2004).

2003

Limit of small exits in open Hamiltonian systems, J Aguirre and MAF Sanjuán, PHYSICAL REVIEW E 67 (5), 056201 (2003).
Wada basins and unpredictability in Hamiltonian and dissipative systems, J Aguirre, JC Vallejo and MAF Sanjuan, INTERNATIONAL JOURNAL OF MODERN PHYSICS B 17, 4171-4175 (2003).
Characterization of the local instability in the Hénon–Heiles Hamiltonian, JC Vallejo, J Aguirre and MAF Sanjuán, PHYSICS LETTERS A 311 (1), 26-38 (2003).
Structures fractales et capacité de prédiction dans certains systèmes dynamiques non linéaires, J Aguirre and MAF Sanjuán, COMPTE-RENDUS DE LA 6 EME RENCONTRE DU NON-LINEAIRE 2003, Eds. Y. Pomeau and R. Ribotta (Non-Linéaire Publications, Orsay 2003), 265 - 270, France.

2002

Unpredictable behavior in the Duffing oscillator: Wada basins, J Aguirre and MAF Sanjuán, PHYSICA D: NONLINEAR PHENOMENA 171 (1), 41-51 (2002).

2001

Wada basins and chaotic invariant sets in the Hénon-Heiles system, J Aguirre, JC Vallejo and MAF Sanjuán, PHYSICAL REVIEW E 64 (6), 066208 (2001).
Chaotic invariant sets and fractal structures in the Hénon-Heiles system, J Aguirre, JC Vallejo and MAF Sanjuán, III JORNADAS DE MECÁNICA CELESTE: MONOGRAFÍAS DEL SEMINARIO MATEMÁTICO 2001/ Antonio Elipe Sánchez (ed. lit.), Luis Miguel Floría Gimeno (aut.), ISBN 84-95480-21-2, 45-52 (2001).

Jacobo Aguirre's Homepage

life, scientific interests, and little more...

Contact

Some useful links